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An individual Based Model of anchovy early life stages in the Bay of Biscay: validation of vertical distribution and growth ArchiMer
Huret, Martin; Petitgas, Pierre; Bourriau, Paul; Grellier, Patrick.
The objective of the study is a better understanding of recruitment variability in anchovy population. An Individual Based Model (IBM) is being developed for the full life cycle of anchovy. The early life stages are presented on this poster. The model is tested in a 1D-vertical framework for validation of the vertical distribution of modelled eggs and larvae against in-situ data. The dynamic Energy Budget (DEB) theory is the biological baseline for individual growth. We test its ability to simulate the observed growth curves between years with contrasted temperatures.
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00054/16508/14022.pdf
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Anchovy (Engraulis encrasicolus) egg density measurements in the Bay of Biscay: evidence for the spatial variation in egg density with sea surface salinity ArchiMer
Goarant, Anne; Petitgas, Pierre; Bourriau, Paul.
Knowledge of the pelagic vertical distribution of fish eggs is central for several aspects of fisheries science including fisheries recruitment and egg production studies. In modelling egg vertical distributions, variation in fish egg density is an important issue. Though variation in egg density between individual eggs has been reported, evidence for significant spatial variation in egg density is novel. The present study provides evidence that egg density of anchovy (Engraulis encrasicolus) varies spatially across spawning sites in the Bay of Biscay, depending on the regional scale variation in sea water properties due to river discharge. We measured the density of the eggs using a density gradient column at 17 stations in 2005 and 2006 as well as their...
Tipo: Text Palavras-chave: Bay of Biscay; Anchovy; Fish egg density; Density gradient column.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3007.pdf
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Coccolith-derived turbidity and hydrological conditions in May in the Bay of Biscay ArchiMer
Perrot, Laurie; Gohin, Francis; Ruiz-pino, Diana; Lampert, Luis; Huret, Martin; Dessier, Aurelie; Malestroit, Pascale; Dupuy, Christine; Bourriau, Paul.
Coccolithophore blooms occur regularly from April to June in the Bay of Biscay where they have been observed for many years from ocean-colour imagery thanks to the ability of their calcite plates to scatter light. They are easily depicted on interpolated images of non-algal Suspended Particulate Matter (SPM) derived from satellite reflectance data in May, at the time of the PELGAS (PELagique GAScogne) annual surveys. Over the springs 2012 to 2015, the PELGAS surveys provided in-situ data on the turbidity throughout the water column and on the hydrological environment prevailing during the blooms in the vicinity of the continental shelf break. The satellite-derived SPM in the area of coccolithophore blooms was closely related to measured turbidity in the...
Tipo: Text Palavras-chave: Bay of Biscay; Ocean colour; Suspended particulate matter; Turbidity; Coccoliths; Stratification.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00416/52790/53689.pdf
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Combining acoustic and CUFES data for the quality control of fish-stock survey estimates ArchiMer
Petitgas, Pierre; Goarant, Anne; Masse, Jacques; Bourriau, Paul.
Petitgas, P., Goarant, A., Masse, J., and Bourriau, P. 2009. Combining acoustic and CUFES data for the quality control of fish-stock survey estimates. - ICES Journal of Marine Science, 66: 1384-1390.
Tipo: Text Palavras-chave: CUFES; Biscay; Bias; Anchovy; Acoustics; Abundance.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6566.pdf
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Data products for fish stocks and ecosystem assessment:the PELGAS survey example ArchiMer
Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jérôme; Berger, Laurent; Dorémus, Ghislain; Bourriau, Paul; Grellier, Patrick; Massé, Jacques; Sanchez, Florence.
The initial objective of the PELGAS integrated survey was to assess the biomass of small pelagic fish in the Bay of Biscay in spring. Sampling has been extended to study the spatial structure and dynamics of the pelagic ecosystem in springtime. The PELGAS survey has produced since 2000 long-term time-series of spatially-explicit data and indices, describing the main pelagic ecosystem components: hydrology, phytoplankton, mesozooplankton, fish and megafauna. In addition to small pelagic fish biomass estimates used for fish stock assessment, the survey now delivers two types of ecosystem products: standard gridded maps of ecosystem parameters, and a time series dataset of indicators of the Bay of Biscay pelagic ecosystem state. The evolution of the PELGAS...
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Ano: 2018 URL: http://archimer.ifremer.fr/doc/00457/56844/58693.pdf
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Densité des oeufs d'anchois (Engraulis encrasicolus) et de sardines (Sardina pilchardus) dans le golfe de Gascogne ArchiMer
Couraudon-reale, Marine; Huret, Martin; Bourriau, Paul; Taraud, Laure; Petitgas, Pierre.
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00023/13375/10400.pdf
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Fifteen years of data from the PELGAS integrated survey (2000-2015): what have we learned on the Bay of Biscay pelagic ecosystem? ArchiMer
Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jérôme; Authier, Matthieu; Berger, Laurent; Doremus, Ghislain; Bourriau, Paul; Grellier, Patrick; Masse, Jacques; Sanchez, Florence.
The initial focus of the PELGAS integrated survey was to assess the small pelagic fish biomass in the Bay of Biscay in springtime, for fisheries management purposes. Sampling has been extended to produce long-term time-series of spatially-explicit data and indices, describing the main pelagic ecosystem components: hydrology, phytoplankton, mesozooplankton, fish and megafauna. A collaborative analysis of these datasets has brought new insights on the Bay of Biscay pelagic ecosystem summarized here. New results on single ecosystem components include an analysis of water samples to groundtruth the results of an ocean color algorithm aiming at detecting phytoplanktonic coccolithophores. New insights on mesozooplankton spatio-temporal distribution and energy...
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Ano: 2018 URL: http://archimer.ifremer.fr/doc/00445/55665/57331.pdf
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Hydro-plankton characteristics and their relationship with sardine and anchovy distributions on the French shelf of the Bay of Biscay ArchiMer
Petitgas, Pierre; Masse, Jacques; Bourriau, Paul; Beillois, Pierre; Bergeron, Jean-pierre; Delmas, Daniel; Herbland, Alain; Koueta, Noussithe; Froidefond, Jean-marie; Santos, Maria.
The spatial pattern in hydro-plankton and fish distributions and their relationship were analysed based on the spring 2000 fisheries acoustic survey. The importance of this survey was that it was a multi-disciplinary platform which collected an extensive set of parameters in the hydro-plankton leading to a potentially finer description of hydro-plankton conditions and fish habitats. More than 50 variables were measured on a grid of stations, in four compartments of the ecosystem: hydrology, nutrients, primary producers and meso-zooplankton. First, a joint analysis of all hydro-plankton compartments was performed using multiple factor analysis (MFA). The method was used to estimate a compromise factorial space common to all compartments in which the...
Tipo: Text Palavras-chave: Fish environment relationship; Hydro plankton; Habitats; Multiple factor analysis; Spatial pattern.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-3961.pdf
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Integrated understanding of initial conditions of early life stages using integrated ecosystem survey data ArchiMer
Petitgas, Pierre; Huret, Martin; Doray, Mathieu; Bourriau, Paul; Lunven, Michel.
Since 2000, the yearly acoustic pelagic survey of Ifremer in the Bay of Biscay designed for fish stock assessment of small pelagic fish has been converted into an integrated pelagic ecosystem monitoring plateforme. This has been achieved by coupling sensors and automating data acquisition streams. The data series now spans from 2000 to 2014. Together with data sensors and sampling designs, we present here an integrated study allowing to understand the spawning process of anchovy. We compare the maps of anchovy eggs obtained with CUFES (continuous underway fish egg sampler) with that of their spawning adults sampled at the same time by acoustics and identification trawl hauls. The distributions of eggs are surprisingly different than that of adults, with in...
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Ano: 2015 URL: http://archimer.ifremer.fr/doc/00281/39177/37738.pdf
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Size, permeability and buoyancy of anchovy ( Engraulis Encrasicolus ) and sardine ( Sardina Pilchardus ) eggs in relation to their physical environment in the Bay of Biscay ArchiMer
Huret, Martin; Bourriau, Paul; Gatti, Paul; Dumas, Franck; Petitgas, Pierre.
The size and specific gravity of eggs of marine pelagic fish partly determine their dispersal and survival. Using an original dataset of anchovy and sardine eggs, sampled in spring over the last decade in the Bay of Biscay, we provide a parameterization of these properties on ambient water temperature and salinity. We used the density gradient column for measurement of egg specific gravity. The column was also filled with homogeneous water for sinking velocity experiments. For anchovy, these experiments confirm that the effect of egg permeability through the chorion could be neglected when modelling sinking, while it has to be considered for sardine, its perivitelline space representing 78.6% (±6.2%) of the total egg volume, as opposed to 5–10% for most...
Tipo: Text Palavras-chave: Anchovy; Bay of Biscay; Density gradient column; Egg buoyancy; Egg permeability; Egg size; Sardine.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00346/45676/45326.pdf
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Survey timing vs. ecosystem scheduling: Degree-days to underpin observed interannual variability in marine ecosystems ArchiMer
Huret, Martin; Bourriau, Paul; Doray, Mathieu; Gohin, Francis; Petitgas, Pierre.
Fishery annual surveys are shifting towards integrated ecosystem surveys. However, monitoring the whole ecosystem once a year entails special attention to the interpretation of observations, because they only represent a snapshot in the seasonal dynamics of the environment, of a species, or any dynamic process of interest. The dependency of this snapshot to the timing, but also to the duration, of the survey with respect to this seasonal dynamics needs to be considered. Fish stock assessment is only little impacted by the observed timing within a given season, whereas warming, stratification, plankton bloom occurrence, or fish fecundity, are processes rapidly changing especially in spring. Firstly, from independent satellite data, we described the seasonal...
Tipo: Text Palavras-chave: Ecosystem survey; Anchovy; Sardine; Spawning; Sea surface temperature; Degree day; Bay of Biscay.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00394/50584/51483.pdf
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The PELGAS survey: ship-based integrated monitoring of the Bay of Biscay pelagic ecosystem ArchiMer
Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jerome; Authier, Matthieu; Sanchez, Florence; Berger, Laurent; Doremus, Ghislain; Bourriau, Paul; Grellier, Patrick; Masse, Jacques.
The Pélagiques Gascogne (PELGAS) integrated survey has been developed by a multidisciplinary team of Ifremer and La Rochelle University scientists since 2000, joined by commercial fishermen in 2007. Its initial focus was to assess the biomass and predict the recruitment success of anchovy in the Bay of Biscay in spring. Taking advantage of the space and versatility of R/V Thalassa II, sampling has been progressively extended to other ecosystem components. PELGAS therefore further developed the second objective of monitoring and studying the dynamic and diverse Biscay pelagic ecosystem in springtime. The PELGAS survey model has allowed for the establishment of a long-term time-series of spatially-explicit data of the Bay of Biscay pelagic ecosystem since...
Tipo: Text Palavras-chave: Pelagic ecosystem; Integrated ecosystem monitoring survey; Marine Strategy Framework Directive; Ecosystem variability; Bay of Biscay; Fishing vessels.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00407/51801/52401.pdf
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The ZooCAM, a new in-flow imaging system for fast onboard counting, sizing and classification of fish eggs and metazooplankton ArchiMer
Colas, Florent; Tardivel, Morgan; Perchoc, Jonathan; Lunven, Michel; Forest, Bertrand; Guyader, Gerard; Danielou, Marie-madeleine; Le Mestre, Sophie; Bourriau, Paul; Antajan, Elvire; Sourisseau, Marc; Huret, Martin; Petitgas, Pierre; Romagnan, Jean-baptiste.
In this paper we present the ZooCAM, a system designed to digitize and analyse on board large volume samples of preserved and living metazooplankton (i.e. multicellular zooplankton) and fish eggs > 300 µm ESD. The ZooCAM has been specifically designed to overcome the difficulties to analyse zooplankton and fish eggs in the framework of the PELGAS survey, and provide high frequency data. The ZooCAM fish eggs counts were comparable to those done with a dissecting microscope. The ZooCAM enabled the accurate prediction and fast on board validation of staged anchovy and sardine eggs in almost real time after collection. A comparison with the ZooScan, on a more complex zooplanktonic community, provided encouraging results on the agreement between the 2...
Tipo: Text Palavras-chave: ZooCAM; In-flow imaging; Fish eggs; Zooplankton; Ecosystemic survey.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00407/51833/52432.pdf
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